YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OXA1L_ARATH
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.25
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATCLRGITK RVNLLQRRVY PSCGHLIRDD RDETKSGSSD TMIREVLARN GTNKLSSMFA  60
   61 DRHYQSFATG PLGLGLSSCR HMSSTPPEWS DKVDGIDFVA TEVVPDEIIE AVTTTSQAVV 120
  121 PAINEVAIAA ADSAFPVAAL QHLIDAVHSF TGLNWWASIA LTTVLIRGVT IPILLNQLKA 180
  181 TYKLNVLRPQ LEELRQEMST KAQDPEAMAE GQRRMQLLFK EHGVTPFTPL KGLIIQGPIF 240
  241 ISFFFAIRNM AEKVPSFKTG GTLWFTDLTT TDTTYILPLL TAVTFLIMVE SNMQEGLEGN 300
  301 PVAGTMKKFS RIIAFLSIPV LIGIEKALFC YWLTSNLFTL VYGLTLRRPD VRKLLNLPDV 360
  361 VNSSTRQPSP SSPLPFSFAE PKDQSVVAQE KPPMSSESSS SVPDRRISRS SVLNQRIRTL 420
  421 ERQLKDRKIK K

Type	Start	End	Confidence
Cytoplasmic	1	125	0.71
Transmembrane Helix	126	140	0.25
Non-Cytoplasmic	141	151	0.44
Transmembrane Helix	152	175	0.62
Cytoplasmic	176	226	0.56
Transmembrane Helix	227	247	0.79
Non-Cytoplasmic	248	267	0.55
Transmembrane Helix	268	289	0.69
Cytoplasmic	290	311	0.55
Transmembrane Helix	312	335	0.67
Non-Cytoplasmic	336	431	0.56