YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NPS11_ARATH, NS1...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPISAVSEE LAEIEGQIND IFRALSNGFQ KLEKIKDANR QSRQLEELTD KMRDCKSLIK  60
   61 DFDREIKSLE SGNDASTNRM LNDRRQSMVK ELNSYVALKK KYSSNLASNN KRVDLFDGPG 120
  121 EEHMEENVLL ASNMSNQELM DKGNSMMDDT DQAIERGKKI VQETINVGTD TSAALKPQTE 180
  181 QMSRVVNELD SIHFSLKKAS KLVKEIGRQV ATDKCIMAFL FLIVIGVIAI IIVKIVNPNN 240
  241 KDIRDIPGVG LAPPAMNRRL LWNHY

Type	Start	End	Confidence
Cytoplasmic	1	214	0.64
Transmembrane Helix	215	236	0.89
Non-Cytoplasmic	237	265	0.62