YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NRAM6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	36	0.95
Transmembrane Helix	37	55	0.89
Non-Cytoplasmic	56	72	0.90
Transmembrane Helix	73	96	0.93
Cytoplasmic	97	114	0.91
Transmembrane Helix	115	135	0.91
Non-Cytoplasmic	136	145	0.68
Transmembrane Helix	146	165	0.95
Cytoplasmic	166	174	0.83
Transmembrane Helix	175	195	0.94
Non-Cytoplasmic	196	214	0.96
Transmembrane Helix	215	235	0.94
Cytoplasmic	236	255	0.88
Transmembrane Helix	256	278	0.85
Non-Cytoplasmic	279	320	0.91
Transmembrane Helix	321	341	0.91
Cytoplasmic	342	359	0.85
Transmembrane Helix	360	380	0.92
Non-Cytoplasmic	381	385	0.76
Transmembrane Helix	386	407	0.92
Cytoplasmic	408	420	0.83
Transmembrane Helix	421	442	0.90
Non-Cytoplasmic	443	457	0.82
Transmembrane Helix	458	482	0.89
Cytoplasmic	483	527	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAETASGSN RSISNSPLIE NSDSNQILVP EKKSWKNFFS YLGPGFLVSI AYIDPGNFET  60
   61 DLQSGAQYKY ELLWIILVAS CAALVIQSLA ANLGVVTGKH LAEHCRAEYS KVPNFMLWVV 120
  121 AEIAVVACDI PEVIGTAFAL NMLFNIPVWI GVLLTGLSTL ILLALQQYGI RKLEFLIAFL 180
  181 VFTIALCFFV ELHYSKPDPK EVLYGLFVPQ LKGNGATGLA ISLLGAMVMP HNLFLHSALV 240
  241 LSRKIPRSVT GIKEACRYYL IESGLALMVA FLINVSVISV SGAVCNASDL SPEDRASCQD 300
  301 LDLNKASFLL RNVVGKWSSK LFAIALLASG QSSTITGTYA GQYVMQGFLD LRLEPWLRNF 360
  361 LTRCLAIIPS LIVALIGGSA GAGKLIIIAS MILSFELPFA LVPLLKFTSS KTKMGSHANS 420
  421 LVISSVTWII GGLIMGINIY YLVSSFIKLL LHSHMNLVAI VFLGVLGFSG IATYLAAISY 480
  481 LVLRKNRESS STHFLDFSNS QTEETLPRED IANMQLPNRV AVIGDLN