YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NRAM5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	69	0.95
Transmembrane Helix	70	88	0.87
Non-Cytoplasmic	89	103	0.77
Transmembrane Helix	104	123	0.91
Cytoplasmic	124	143	0.86
Transmembrane Helix	144	166	0.82
Non-Cytoplasmic	167	178	0.70
Transmembrane Helix	179	199	0.91
Cytoplasmic	200	206	0.93
Transmembrane Helix	207	226	0.91
Non-Cytoplasmic	227	252	0.86
Transmembrane Helix	253	272	0.71
Cytoplasmic	273	291	0.75
Transmembrane Helix	292	316	0.79
Non-Cytoplasmic	317	347	0.77
Transmembrane Helix	348	370	0.86
Cytoplasmic	371	388	0.72
Transmembrane Helix	389	408	0.93
Non-Cytoplasmic	409	426	0.70
Transmembrane Helix	427	446	0.83
Cytoplasmic	447	457	0.73
Transmembrane Helix	458	478	0.93
Non-Cytoplasmic	479	484	0.71
Transmembrane Helix	485	508	0.91
Cytoplasmic	509	530	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGSTVSRQE NSPKRPNDSN GEFKRLLVPE TSQPEEDELH ESPPENQILN VEEDRDKTYD  60
   61 SVPPFSWAKL WKFTGPGFLM SIAFLDPGNI EGDLQAGAVA GYSLLWLLLW ATLMGLLMQL 120
  121 LSARIGVATG RHLAEICRSE YPSWARILLW FMAEVALIGA DIQEVIGSAI ALQILTRGFL 180
  181 PIWVGVIITS FDCFLISYLE KCGMRKLEGL FAVLIATMAL SFAWMFNETK PSVEELFIGI 240
  241 IIPKLGSKTI REAVGVVGCV ITPHNVFLHS ALVQSRKTDP KEINRVQEAL NYYTIESSAA 300
  301 LFVSFMINLF VTAVFAKGFY GTKQADSIGL VNAGYYLQEK YGGGVFPILY IWGIGLLAAG 360
  361 QSSTITGTYA GQFIMEGFLD LQMEQWLSAF ITRSFAIVPT MFVAIMFNTS EGSLDVLNEW 420
  421 LNILQSMQIP FAVIPLLTMV SNEHIMGVFK IGPSLEKLAW TVAVFVMMIN GYLLLDFFMA 480
  481 EVEGFLVGFL VFGGVVGYIS FIIYLVSYRS SQSSSWSSLE MSERVVSTET