YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NRAM4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	51	0.98
Transmembrane Helix	52	70	0.93
Non-Cytoplasmic	71	83	0.80
Transmembrane Helix	84	105	0.88
Cytoplasmic	106	124	0.89
Transmembrane Helix	125	145	0.83
Non-Cytoplasmic	146	160	0.69
Transmembrane Helix	161	181	0.93
Cytoplasmic	182	190	0.82
Transmembrane Helix	191	209	0.96
Non-Cytoplasmic	210	230	0.94
Transmembrane Helix	231	255	0.84
Cytoplasmic	256	273	0.94
Transmembrane Helix	274	296	0.90
Non-Cytoplasmic	297	329	0.94
Transmembrane Helix	330	352	0.89
Cytoplasmic	353	370	0.82
Transmembrane Helix	371	389	0.96
Non-Cytoplasmic	390	405	0.83
Transmembrane Helix	406	424	0.86
Cytoplasmic	425	435	0.74
Transmembrane Helix	436	457	0.88
Non-Cytoplasmic	458	466	0.70
Transmembrane Helix	467	488	0.93
Cytoplasmic	489	512	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSETDRERPL LASEERAYEE TEKVLIVGID EEEDADYDDD PGNSPKFSWK KLWLFTGPGF  60
   61 LMSIAFLDPG NLESDLQAGA IAGYSLIWLL MWATAIGLLI QLLSARLGVA TGRHLAELCR 120
  121 EEYPTWARMV LWIMAEIALI GADIQEVIGS AIAIKILSNG LVPLWAGVVI TALDCFIFLF 180
  181 LENYGIRKLE AVFAILIATM ALAFAWMFGQ TKPSGTELLV GALVPKLSSR TIKQAVGIVG 240
  241 CIIMPHNVFL HSALVQSREV DPKKRFRVKE ALKYYSIEST GALAVSFIIN VFVTTVFAKS 300
  301 FYGTEIADTI GLANAGQYLQ DKYGGGFFPI LYIWAIGVLA AGQSSTITGT YAGQFIMGGF 360
  361 LNLKMKKWVR ALITRSCAII PTMIVALVFD SSDSMLDELN EWLNVLQSVQ IPFAVIPLLC 420
  421 LVSNEQIMGS FKIQPLVQTI SWIVAALVIA INGYLMVDFF SGAATNLILL VPVIIFAIAY 480
  481 VVFVLYLISR GLTYTPWQLV ASSHKEPQRD DE