YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NRAM2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	67	0.97
Transmembrane Helix	68	86	0.91
Non-Cytoplasmic	87	99	0.78
Transmembrane Helix	100	121	0.86
Cytoplasmic	122	144	0.84
Transmembrane Helix	145	165	0.75
Non-Cytoplasmic	166	176	0.65
Transmembrane Helix	177	197	0.93
Cytoplasmic	198	206	0.75
Transmembrane Helix	207	225	0.96
Non-Cytoplasmic	226	246	0.87
Transmembrane Helix	247	270	0.82
Cytoplasmic	271	286	0.94
Transmembrane Helix	287	310	0.88
Non-Cytoplasmic	311	345	0.91
Transmembrane Helix	346	369	0.85
Cytoplasmic	370	386	0.81
Transmembrane Helix	387	407	0.92
Non-Cytoplasmic	408	418	0.83
Transmembrane Helix	419	439	0.81
Cytoplasmic	440	455	0.77
Transmembrane Helix	456	473	0.96
Non-Cytoplasmic	474	482	0.67
Transmembrane Helix	483	504	0.93
Cytoplasmic	505	530	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENDVKENLE EEEDRLLPPP PPSQSLPSTD SESEAAFETN EKILIVDFES PDDPTTGDTP  60
   61 PPFSWRKLWL FTGPGFLMSI AFLDPGNLEG DLQAGAIAGY SLLWLLMWAT AMGLLIQMLS 120
  121 ARVGVATGRH LAELCRDEYP TWARYVLWSM AELALIGADI QEVIGSAIAI QILSRGFLPL 180
  181 WAGVVITASD CFLFLFLENY GVRKLEAVFA VLIATMGLSF AWMFGETKPS GKELMIGILL 240
  241 PRLSSKTIRQ AVGVVGCVIM PHNVFLHSAL VQSRKIDPKR KSRVQEALNY YLIESSVALF 300
  301 ISFMINLFVT TVFAKGFYGT EKANNIGLVN AGQYLQEKFG GGLLPILYIW GIGLLAAGQS 360
  361 STITGTYAGQ FIMGGFLNLR LKKWMRAVIT RSCAIVPTMI VAIVFNTSEA SLDVLNEWLN 420
  421 VLQSVQIPFA LLPLLTLVSK EEIMGDFKIG PILQRIAWTV AALVMIINGY LLLDFFVSEV 480
  481 DGFLFGVTVC VWTTAYIAFI VYLISHSNFF PSPWSSSSIE LPKRVSVSNS