YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NRAM1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	44	0.97
Transmembrane Helix	45	63	0.91
Non-Cytoplasmic	64	80	0.91
Transmembrane Helix	81	104	0.93
Cytoplasmic	105	122	0.91
Transmembrane Helix	123	143	0.91
Non-Cytoplasmic	144	152	0.67
Transmembrane Helix	153	173	0.94
Cytoplasmic	174	182	0.85
Transmembrane Helix	183	203	0.94
Non-Cytoplasmic	204	222	0.96
Transmembrane Helix	223	243	0.94
Cytoplasmic	244	263	0.88
Transmembrane Helix	264	286	0.87
Non-Cytoplasmic	287	328	0.92
Transmembrane Helix	329	351	0.87
Cytoplasmic	352	367	0.89
Transmembrane Helix	368	388	0.91
Non-Cytoplasmic	389	393	0.72
Transmembrane Helix	394	415	0.87
Cytoplasmic	416	428	0.80
Transmembrane Helix	429	451	0.87
Non-Cytoplasmic	452	464	0.79
Transmembrane Helix	465	490	0.89
Cytoplasmic	491	532	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATGSGRSQ FISSSGGNRS FSNSPLIENS DSNQIIVSEK KSWKNFFAYL GPGFLVSIAY  60
   61 IDPGNFETDL QAGAHYKYEL LWIILVASCA ALVIQSLAAN LGVVTGKHLA EQCRAEYSKV 120
  121 PNFMLWVVAE IAVVACDIPE VIGTAFALNM LFSIPVWIGV LLTGLSTLIL LALQKYGVRK 180
  181 LEFLIAFLVF TIAICFFVEL HYSKPDPGEV LHGLFVPQLK GNGATGLAIS LLGAMVMPHN 240
  241 LFLHSALVLS RKIPRSASGI KEACRFYLIE SGLALMVAFL INVSVISVSG AVCNAPNLSP 300
  301 EDRANCEDLD LNKASFLLRN VVGKWSSKLF AIALLASGQS STITGTYAGQ YVMQGFLDLR 360
  361 LEPWLRNLLT RCLAIIPSLI VALIGGSAGA GKLIIIASMI LSFELPFALV PLLKFTSCKT 420
  421 KMGSHVNPMA ITALTWVIGG LIMGINIYYL VSSFIKLLIH SHMKLILVVF CGILGFAGIA 480
  481 LYLAAIAYLV FRKNRVATSL LISRDSQNVE TLPRQDIVNM QLPCRVSTSD VD