YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NIP61_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHEEIPSTP STPATTPGTP GAPLFGGFEG KRNGHNGRYT PKSLLKSCKC FSVDNEWALE  60
   61 DGRLPPVTCS LPPPNVSLYR KLGAEFVGTL ILIFAGTATA IVNQKTDGAE TLIGCAASAG 120
  121 LAVMIVILST GHISGAHLNP AVTIAFAALK HFPWKHVPVY IGAQVMASVS AAFALKAVFE 180
  181 PTMSGGVTVP TVGLSQAFAL EFIISFNLMF VVTAVATDTR AVGELAGIAV GATVMLNILI 240
  241 AGPATSASMN PVRTLGPAIA ANNYRAIWVY LTAPILGALI GAGTYTIVKL PEEDEAPKER 300
  301 RSFRR

Type	Start	End	Confidence
Cytoplasmic	1	81	0.95
Transmembrane Helix	82	102	0.90
Non-Cytoplasmic	103	111	0.77
Transmembrane Helix	112	136	0.84
Cytoplasmic	137	155	0.84
Transmembrane Helix	156	178	0.88
Non-Cytoplasmic	179	193	0.87
Transmembrane Helix	194	216	0.86
Cytoplasmic	217	224	0.80
Transmembrane Helix	225	247	0.89
Non-Cytoplasmic	248	265	0.95
Transmembrane Helix	266	288	0.94
Cytoplasmic	289	305	0.96