YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NIP51_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPPEAEVGA VMVMAPPTPG TPGTPGGPLI TGMRVDSMSF DHRKPTPRCK CLPVMGSTWG  60
   61 QHDTCFTDFP SPDVSLTRKL GAEFVGTFIL IFTATAGPIV NQKYDGAETL IGNAACAGLA 120
  121 VMIIILSTGH ISGAHLNPSL TIAFAALRHF PWAHVPAYIA AQVSASICAS FALKGVFHPF 180
  181 MSGGVTIPSV SLGQAFALEF IITFILLFVV TAVATDTRAV GELAGIAVGA TVMLNILVAG 240
  241 PSTGGSMNPV RTLGPAVASG NYRSLWVYLV APTLGAISGA AVYTGVKLND SVTDPPRPVR 300
  301 SFRR

Type	Start	End	Confidence
Cytoplasmic	1	79	0.93
Transmembrane Helix	80	100	0.88
Non-Cytoplasmic	101	109	0.79
Transmembrane Helix	110	134	0.86
Cytoplasmic	135	151	0.84
Transmembrane Helix	152	173	0.90
Non-Cytoplasmic	174	191	0.78
Transmembrane Helix	192	214	0.88
Cytoplasmic	215	222	0.74
Transmembrane Helix	223	244	0.89
Non-Cytoplasmic	245	264	0.89
Transmembrane Helix	265	286	0.93
Cytoplasmic	287	304	0.90