YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NIP21_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDISVSKSN HGNVVVLNIK ASSLADTSLP SNKHESSSPP LLSVHFLQKL LAELVGTYYL  60
   61 IFAGCAAIAV NAQHNHVVTL VGIAVVWGIV IMVLVYCLGH LSAHFNPAVT LALASSQRFP 120
  121 LNQVPAYITV QVIGSTLASA TLRLLFDLNN DVCSKKHDVF LGSSPSGSDL QAFVMEFIIT 180
  181 GFLMLVVCAV TTTKRTTEEL EGLIIGATVT LNVIFAGEVS GASMNPARSI GPALVWGCYK 240
  241 GIWIYLLAPT LGAVSGALIH KMLPSIQNAE PEFSKTGSSH KRVTDLPL

Type	Start	End	Confidence
Cytoplasmic	1	49	0.92
Transmembrane Helix	50	72	0.83
Non-Cytoplasmic	73	79	0.65
Transmembrane Helix	80	103	0.87
Cytoplasmic	104	120	0.82
Transmembrane Helix	121	142	0.79
Non-Cytoplasmic	143	171	0.90
Transmembrane Helix	172	192	0.94
Cytoplasmic	193	201	0.85
Transmembrane Helix	202	222	0.91
Non-Cytoplasmic	223	240	0.84
Transmembrane Helix	241	260	0.92
Cytoplasmic	261	288	0.92