YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NIP12_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEISGNGGD ARDGAVVVNL KEEDEQQQQQ QAIHKPLKKQ DSLLSISVPF LQKLMAEVLG  60
   61 TYFLIFAGCA AVAVNTQHDK AVTLPGIAIV WGLTVMVLVY SLGHISGAHF NPAVTIAFAS 120
  121 CGRFPLKQVP AYVISQVIGS TLAAATLRLL FGLDQDVCSG KHDVFVGTLP SGSNLQSFVI 180
  181 EFIITFYLMF VISGVATDNR AIGELAGLAV GSTVLLNVII AGPVSGASMN PGRSLGPAMV 240
  241 YSCYRGLWIY IVSPIVGAVS GAWVYNMVRY TDKPLREITK SGSFLKTVRN GSSR

Type	Start	End	Confidence
Cytoplasmic	1	53	0.85
Transmembrane Helix	54	74	0.86
Non-Cytoplasmic	75	86	0.56
Transmembrane Helix	87	108	0.85
Cytoplasmic	109	128	0.71
Transmembrane Helix	129	151	0.77
Non-Cytoplasmic	152	174	0.92
Transmembrane Helix	175	196	0.89
Cytoplasmic	197	204	0.81
Transmembrane Helix	205	227	0.90
Non-Cytoplasmic	228	245	0.92
Transmembrane Helix	246	267	0.93
Cytoplasmic	268	294	0.95