YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NIP11_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADISGNGYG NAREEVVMVN LKDEVEHQQE MEDIHNPRPL KKQDSLLSVS VPFLQKLIAE  60
   61 FLGTYFLVFT GCASVVVNMQ NDNVVTLPGI AIVWGLTIMV LIYSLGHISG AHINPAVTIA 120
  121 FASCGRFPLK QVPAYVISQV IGSTLAAATL RLLFGLDHDV CSGKHDVFIG SSPVGSDLQA 180
  181 FTMEFIVTFY LMFIISGVAT DNRAIGELAG LAIGSTVLLN VLIAAPVSSA SMNPGRSLGP 240
  241 ALVYGCYKGI WIYLVAPTLG AIAGAWVYNT VRYTDKPLRE ITKSGSFLKT VRIGST

Type	Start	End	Confidence
Cytoplasmic	1	56	0.90
Transmembrane Helix	57	77	0.86
Non-Cytoplasmic	78	86	0.67
Transmembrane Helix	87	111	0.81
Cytoplasmic	112	131	0.77
Transmembrane Helix	132	154	0.81
Non-Cytoplasmic	155	177	0.93
Transmembrane Helix	178	199	0.89
Cytoplasmic	200	207	0.82
Transmembrane Helix	208	230	0.90
Non-Cytoplasmic	231	248	0.93
Transmembrane Helix	249	270	0.93
Cytoplasmic	271	296	0.96