YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NDK3_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSQICRSAS KAAKSLLSSA KNARFFSEGR AIGAAAAVSA SGKIPLYASN FARSSGSGVA  60
   61 SKSWITGLLA LPAAAYMIQD QEVLAAEMER TFIAIKPDGV QRGLISEIIS RFERKGFKLV 120
  121 GIKVIVPSKD FAQKHYHDLK ERPFFNGLCD FLSSGPVIAM VWEGDGVIRY GRKLIGATDP 180
  181 QKSEPGTIRG DLAVTVGRNI IHGSDGPETA KDEISLWFKP QELVSYTSNS EKWLYGDN

Type	Start	End	Confidence
Signal Peptide	1	42	0.70
N-region	1	33
H-region	34	39
C-region	40	42
Cleavage Site	42	43
Non-Cytoplasmic	43	238	0.96