YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MLO2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADQVKERTL EETSTWAVAV VCFVLLFISI VLEHSIHKIG TWFKKKHKQA LFEALEKVKA  60
   61 ELMLLGFISL LLTIGQTPIS NICISQKVAS TMHPCSAAEE AKKYGKKDAG KKDDGDGDKP 120
  121 GRRLLLELAE SYIHRRSLAT KGYDKCAEKG KVAFVSAYGI HQLHIFIFVL AVVHVVYCIV 180
  181 TYAFGKIKMR TWKSWEEETK TIEYQYSNDP ERFRFARDTS FGRRHLNFWS KTRVTLWIVC 240
  241 FFRQFFGSVT KVDYLALRHG FIMAHFAPGN ESRFDFRKYI QRSLEKDFKT VVEISPVIWF 300
  301 VAVLFLLTNS YGLRSYLWLP FIPLVVILIV GTKLEVIITK LGLRIQEKGD VVRGAPVVQP 360
  361 GDDLFWFGKP RFILFLIHLV LFTNAFQLAF FAWSTYEFNL NNCFHESTAD VVIRLVVGAV 420
  421 VQILCSYVTL PLYALVTQMG SKMKPTVFND RVATALKKWH HTAKNETKHG RHSGSNTPFS 480
  481 SRPTTPTHGS SPIHLLHNFN NRSVENYPSS PSPRYSGHGH HEHQFWDPES QHQEAETSTH 540
  541 HSLAHESSEP VLASVELPPI RTSKSLRDFS FKK

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.74
Transmembrane Helix	15	37	0.89
Cytoplasmic	38	57	0.73
Transmembrane Helix	58	79	0.66
Non-Cytoplasmic	80	162	0.95
Transmembrane Helix	163	185	0.93
Cytoplasmic	186	289	0.86
Transmembrane Helix	290	308	0.91
Non-Cytoplasmic	309	315	0.74
Transmembrane Helix	316	337	0.89
Cytoplasmic	338	373	0.94
Transmembrane Helix	374	394	0.94
Non-Cytoplasmic	395	411	0.94
Transmembrane Helix	412	435	0.87
Cytoplasmic	436	573	0.95