YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MLO1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHGGEGMSL EFTPTWVVAG VCTVIVAISL AVERLLHYFG TVLKKKKQKP LYEALQKVKE  60
   61 ELMLLGFISL LLTVFQGLIS KFCVKENVLM HMLPCSLDSR REAGASEHKN VTAKEHFQTF 120
  121 LPIVGTTRRL LAEHAAVQVG YCSEKGKVPL LSLEALHHLH IFIFVLAISH VTFCVLTVIF 180
  181 GSTRIHQWKK WEDSIADEKF DPETALRKRR VTHVHNHAFI KEHFLGIGKD SVILGWTQSF 240
  241 LKQFYDSVTK SDYVTLRLGF IMTHCKGNPK LNFHKYMMRA LEDDFKQVVG ISWYLWIFVV 300
  301 IFLLLNVNGW HTYFWIAFIP FALLLAVGTK LEHVIAQLAH EVAEKHVAIE GDLVVKPSDE 360
  361 HFWFSKPQIV LYLIHFILFQ NAFEIAFFFW IWVTYGFDSC IMGQVRYIVP RLVIGVFIQV 420
  421 LCSYSTLPLY AIVSQMGSSF KKAIFEENVQ VGLVGWAQKV KQKRDLKAAA SNGDEGSSQA 480
  481 GPGPDSGSGS APAAGPGAGF AGIQLSRVTR NNAGDTNNEI TPDHNN

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.88
Transmembrane Helix	16	37	0.92
Cytoplasmic	38	61	0.89
Transmembrane Helix	62	84	0.87
Non-Cytoplasmic	85	158	0.98
Transmembrane Helix	159	181	0.95
Cytoplasmic	182	284	0.99
Transmembrane Helix	285	305	0.89
Non-Cytoplasmic	306	311	0.70
Transmembrane Helix	312	331	0.83
Cytoplasmic	332	370	0.85
Transmembrane Helix	371	393	0.92
Non-Cytoplasmic	394	411	0.77
Transmembrane Helix	412	433	0.91
Cytoplasmic	434	526	0.88