YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MLO10_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.57
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	25	0.56
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	40	0.86
Transmembrane Helix	41	63	0.77
Cytoplasmic	64	83	0.82
Transmembrane Helix	84	106	0.70
Non-Cytoplasmic	107	161	0.96
Transmembrane Helix	162	184	0.91
Cytoplasmic	185	284	0.89
Transmembrane Helix	285	305	0.93
Non-Cytoplasmic	306	311	0.83
Transmembrane Helix	312	334	0.88
Cytoplasmic	335	369	0.91
Transmembrane Helix	370	391	0.89
Non-Cytoplasmic	392	408	0.82
Transmembrane Helix	409	433	0.87
Cytoplasmic	434	569	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATRCFWCWT TLLFCSQLLT GFARASSAGG AKEKGLSQTP TWAVALVCTF FILVSVLLEK  60
   61 ALHRVATWLW EKHKNSLLEA LEKIKAELMI LGFISLLLTF GEQYILKICI PEKAAASMLP 120
  121 CPAPSTHDQD KTHRRRLAAA TTSSRCDEGH EPLIPATGLH QLHILLFFMA AFHILYSFIT 180
  181 MMLGRLKIRG WKKWEQETCS HDYEFSIDPS RFRLTHETSF VRQHSSFWTK IPFFFYAGCF 240
  241 LQQFFRSVGR TDYLTLRHGF IAAHLAPGRK FDFQKYIKRS LEDDFKVVVG ISPLLWASFV 300
  301 IFLLLNVNGW EALFWASILP VLIILAVSTK LQAILTRMAL GITERHAVVQ GIPLVHGSDK 360
  361 YFWFNRPQLL LHLLHFALFQ NAFQLTYFFW VWYSFGLKSC FHTDFKLVIV KLSLGVGALI 420
  421 LCSYITLPLY ALVTQMGSNM KKAVFDEQMA KALKKWHMTV KKKKGKARKP PTETLGVSDT 480
  481 VSTSTSSFHA SGATLLRSKT TGHSTASYMS NFEDQSMSDL EAEPLSPEPI EGHTLVRVGD 540
  541 QNTEIEYTGD ISPGNQFSFV KNVPANDID