YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MCAT_ARATH
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADAWKDLAS GTVGGAAQLV VGHPFDTIKV KLQSQPTPAP GQLPRYTGAI DAVKQTVASE  60
   61 GTKGLYKGMG APLATVAAFN AVLFTVRGQM EGLLRSEAGV PLTISQQFVA GAGAGFAVSF 120
  121 LACPTELIKC RLQAQGALAG ASTTSSVVAA VKYGGPMDVA RHVLRSEGGA RGLFKGLFPT 180
  181 FAREVPGNAT MFAAYEAFKR FLAGGSDTSS LGQGSLIMAG GVAGASFWGI VYPTDVVKSV 240
  241 LQVDDYKNPR YTGSMDAFRK ILKSEGVKGL YKGFGPAMAR SVPANAACFL AYEMTRSSLG 300
  301

Type	Start	End	Confidence
Cytoplasmic	1	64	0.87
Transmembrane Helix	65	86	0.78
Non-Cytoplasmic	87	103	0.80
Transmembrane Helix	104	124	0.81
Cytoplasmic	125	135	0.67
Transmembrane Helix	136	154	0.45
Non-Cytoplasmic	155	210	0.49
Transmembrane Helix	211	232	0.75
Cytoplasmic	233	300	0.55