YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	M1280_ARATH
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVLKWLFLT ISPCDAAEPW QLGSQDAATP IMQGIIDLHH DIFFFLILIL VFVLWILVRA  60
   61 LWHFHYKKNA IPQRIVHGTT IEILRTIFPC FISIFIVEPS FALALDDAAE ALFPNTAPTP 120
  121 SNTSSSEDSF GLRVLSEPWP ITRNLGLESS ICNRIRLLEA ANSPFLLGKE KGQYWGEIQE 180
  181 CLYNVSEQRE YYRLLDFENR DLQIRERKHS CLEVFRGVLL RNPYLEERAA YSPQEAFFDF 240
  241 LNERRDALDI SNPGSSPAEM DRLEILFLGE IERDLLRRGD ESLYIKQLLG D

Type	Start	End	Confidence
Non-Cytoplasmic	1	41	0.73
Transmembrane Helix	42	62	0.95
Cytoplasmic	63	82	0.78
Transmembrane Helix	83	104	0.65
Non-Cytoplasmic	105	291	0.77