YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	M590_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIRNQRFSL LKQPISSTLN QHLVDYPTPS NLSYWWGFGP LAGTMILSVL SSPALVSGLM  60
   61 VARAKNLVHS VLFPIPIFFS INQLFHYFCR LPIIKHLATK CQLLLFLISH FLLLLVLTKL 120
  121 VLDLGGYLFM DDLSRALSQF VPGFSGGLGG GSNTPPNPSG DFFLSSYQTS DPDYHDQRRG 180
  181 DSYFSSAPGV QETHRHASGS STNLHLNLND QSQDPIFLEV ERLSLKCDKV KEKTILKTQS 240
  241 LLLERGYHIP DERDIERAIN VVMTEHETID IDRRRKRFYY LYSCLGKTGN KFWMELLETL 300
  301 ADYNINIKSD SDN

Type	Start	End	Confidence
Cytoplasmic	1	33	0.47
Transmembrane Helix	34	60	0.80
Non-Cytoplasmic	61	66	0.40
Transmembrane Helix	67	89	0.82
Cytoplasmic	90	102	0.43
Transmembrane Helix	103	129	0.73
Non-Cytoplasmic	130	313	0.57