YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LPP3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARFSFPCFP NFGGFNQAVT NRGPEISETA DNWVSPSDIP LIEPNSKEHR MREAQLGGHT  60
   61 LRSHGMTVAR THMHDWIILV LLVILECVLL IIHPFYRFVG KDMMTDLSYP LKSNTVPIWS 120
  121 VPVYAMLLPL VIFIFIYFRR RDVYDLHHAV LGLLYSVLVT AVLTDAIKNA VGRPRPDFFW 180
  181 RCFPDGKALY DSLGDVICHG DKSVIREGHK SFPSGHTSWS FSGLGFLSLY LSGKIQAFDG 240
  241 KGHVAKLCIV ILPLLFAALV GISRVDDYWH HWQDVFAGGL LGLAISTICY LQFFPPPYHT 300
  301 EGWGPYAYFQ VLEAARVQGA ANGAVQQPPP QVNNGEEEDG GFMGLHLVDN PTMRREEDVE 360
  361 TGRG

Type	Start	End	Confidence
Cytoplasmic	1	75	0.97
Transmembrane Helix	76	96	0.95
Non-Cytoplasmic	97	115	0.94
Transmembrane Helix	116	138	0.92
Cytoplasmic	139	145	0.90
Transmembrane Helix	146	167	0.84
Non-Cytoplasmic	168	214	0.90
Transmembrane Helix	215	233	0.88
Cytoplasmic	234	242	0.76
Transmembrane Helix	243	263	0.92
Non-Cytoplasmic	264	274	0.72
Transmembrane Helix	275	294	0.94
Cytoplasmic	295	364	0.93