YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LPP2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEIHLGAHT IRSHGVTVAR FHMHDWLILL LLIVIEIVLN VIEPFHRFVG EDMLTDLRYP  60
   61 LQDNTIPFWA VPLIAVVLPF AVICVYYFIR NDVYDLHHAI LGLLFSVLIT GVITDAIKDA 120
  121 VGRPRPDFFW RCFPDGIGIF HNVTKNVLCT GAKDVVKEGH KSFPSGHTSW SFAGLGFLSL 180
  181 YLSGKIRVFD QRGHVAKLCI VILPLLVAAL VGVSRVDDYW HHWQDVFGGA IIGLTVATFC 240
  241 YLQFFPPPYD PDGWGPHAYF QMLADSRNDV QDSAGMNHLS VRQTELESVR

Type	Start	End	Confidence
Cytoplasmic	1	20	0.92
Transmembrane Helix	21	42	0.86
Non-Cytoplasmic	43	67	0.80
Transmembrane Helix	68	89	0.95
Cytoplasmic	90	95	0.86
Transmembrane Helix	96	117	0.88
Non-Cytoplasmic	118	165	0.89
Transmembrane Helix	166	184	0.87
Cytoplasmic	185	193	0.74
Transmembrane Helix	194	214	0.92
Non-Cytoplasmic	215	225	0.71
Transmembrane Helix	226	245	0.93
Cytoplasmic	246	290	0.93