YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LPP1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIGSFFSSL LFWRNSQDQE AQRGRMQEID LSVHTIKSHG GRVASKHKHD WIILVILIAI  60
   61 EIGLNLISPF YRYVGKDMMT DLKYPFKDNT VPIWSVPVYA VLLPIIVFVC FYLKRTCVYD 120
  121 LHHSILGLLF AVLITGVITD SIKVATGRPR PNFYWRCFPD GKELYDALGG VVCHGKAAEV 180
  181 KEGHKSFPSG HTSWSFAGLT FLSLYLSGKI KAFNNEGHVA KLCLVIFPLL AACLVGISRV 240
  241 DDYWHHWQDV FAGALIGTLV AAFCYRQFYP NPYHEEGWGP YAYFKAAQER GVPVTSSQNG 300
  301 DALRAMSLQM DSTSLENMES GTSTAPR

Type	Start	End	Confidence
Cytoplasmic	1	50	0.98
Transmembrane Helix	51	71	0.95
Non-Cytoplasmic	72	92	0.89
Transmembrane Helix	93	113	0.94
Cytoplasmic	114	122	0.82
Transmembrane Helix	123	145	0.86
Non-Cytoplasmic	146	189	0.97
Transmembrane Helix	190	208	0.90
Cytoplasmic	209	217	0.80
Transmembrane Helix	218	238	0.93
Non-Cytoplasmic	239	249	0.68
Transmembrane Helix	250	269	0.90
Cytoplasmic	270	327	0.98