YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LCYE_ARATH
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MECVGARNFA AMAVSTFPSW SCRRKFPVVK RYSYRNIRFG LCSVRASGGG SSGSESCVAV  60
   61 REDFADEEDF VKAGGSEILF VQMQQNKDMD EQSKLVDKLP PISIGDGALD LVVIGCGPAG 120
  121 LALAAESAKL GLKVGLIGPD LPFTNNYGVW EDEFNDLGLQ KCIEHVWRET IVYLDDDKPI 180
  181 TIGRAYGRVS RRLLHEELLR RCVESGVSYL SSKVDSITEA SDGLRLVACD DNNVIPCRLA 240
  241 TVASGAASGK LLQYEVGGPR VCVQTAYGVE VEVENSPYDP DQMVFMDYRD YTNEKVRSLE 300
  301 AEYPTFLYAM PMTKSRLFFE ETCLASKDVM PFDLLKTKLM LRLDTLGIRI LKTYEEEWSY 360
  361 IPVGGSLPNT EQKNLAFGAA ASMVHPATGY SVVRSLSEAP KYASVIAEIL REETTKQINS 420
  421 NISRQAWDTL WPPERKRQRA FFLFGLALIV QFDTEGIRSF FRTFFRLPKW MWQGFLGSTL 480
  481 TSGDLVLFAL YMFVISPNNL RKGLINHLIS DPTGATMIKT YLKV

Type	Start	End	Confidence
Non-Cytoplasmic	1	439	0.77
Transmembrane Helix	440	461	0.67
Cytoplasmic	462	469	0.48
Transmembrane Helix	470	495	0.83
Non-Cytoplasmic	496	524	0.49