YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KIME_ARATH
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVKARAPGK IILAGEHAVV HGSTAVAAAI DLYTYVTLRF PLPSAENNDR LTLQLKDISL  60
   61 EFSWSLARIK EAIPYDSSTL CRSTPASCSE ETLKSIAVLV EEQNLPKEKM WLSSGISTFL 120
  121 WLYTRIIGFN PATVVINSEL PYGSGLGSSA ALCVALTAAL LASSISEKTR GNGWSSLDET 180
  181 NLELLNKWAF EGEKIIHGKP SGIDNTVSAY GNMIKFCSGE ITRLQSNMPL RMLITNTRVG 240
  241 RNTKALVSGV SQRAVRHPDA MKSVFNAVDS ISKELAAIIQ SKDETSVTEK EERIKELMEM 300
  301 NQGLLLSMGV SHSSIEAVIL TTVKHKLVSK LTGAGGGGCV LTLLPTGTVV DKVVEELESS 360
  361 GFQCFTALIG GNGAQICY

Type	Start	End	Confidence
Cytoplasmic	1	110	0.75
Transmembrane Helix	111	129	0.67
Non-Cytoplasmic	130	143	0.64
Transmembrane Helix	144	165	0.78
Cytoplasmic	166	378	0.74