YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCO5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPLISPQPR FRLQPIPENP SSSSSSASIT IPRSISNTSF FHEISQERLL LHHQDLEQSV  60
   61 QDDKEDQDSD SDETNRFLSQ TRPLHRSRTA PAMVIIKDLR TKPPETKKPS PVSKSIIRQA 120
  121 IFLLIVYLTL GVSIYSFNRD HYSGIETHPV VDALYFCIVT MCTIGYGDIA PLTPWTKIFA 180
  181 VVFVLFGFGF LDILLSGVVN YVLDLQESMI LTGIQTRQHH QHHHHHRFSA KDYIIDFEKG 240
  241 RMRIRMKVCL ALCVVVLCIG VGALVLHFVE ELGFVDSVYL SVMSVTTVGY GDRAFKTLQG 300
  301 RLFAAVWLLV STLAVARAFL YLAEARIDRR HRKAVKLALN REITVDDLLK ADTYQHGFIS 360
  361 KSEYIVLKLK EMGKITQKDI DQVVIQFEKL DPNQIGKITL PDLLGDPL

Type	Start	End	Confidence
Cytoplasmic	1	115	0.54
Transmembrane Helix	116	137	0.86
Non-Cytoplasmic	138	177	0.54
Transmembrane Helix	178	202	0.86
Cytoplasmic	203	247	0.96
Transmembrane Helix	248	269	0.94
Non-Cytoplasmic	270	302	0.88
Transmembrane Helix	303	323	0.93
Cytoplasmic	324	408	0.93