YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCO4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEENLLNEN LLHPNESSPE ETQVTTVSKS KWTILVLAMI LLLVYLTFGV CTYSFFRDQF  60
   61 SGTETNLFVD AFYFSIVTFS TVGYGDIVPS TSTTKILTIV LVSTGVVFLD YLLNRVVSHV 120
  121 LSLQENAILD RINKTRNRAI RDHIAEDGKI RLKWKLCLAF CAVGLCVGSG ALFLHVFERL 180
  181 DWLDSVYLSV ISVTTVGYGD KTFKTVEGRG FAVFWLLLST IAMATLFLYL AEMRIDRTTV 240
  241 MKLPPR

Type	Start	End	Confidence
Cytoplasmic	1	31	0.56
Transmembrane Helix	32	56	0.88
Non-Cytoplasmic	57	92	0.44
Transmembrane Helix	93	113	0.70
Cytoplasmic	114	155	0.94
Transmembrane Helix	156	177	0.93
Non-Cytoplasmic	178	210	0.88
Transmembrane Helix	211	231	0.95
Cytoplasmic	232	246	0.86