YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCO3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPMTPSEFKN RLLFGSLPRS SSDPTDLQFT EPNVPPSLFS LPEHNDDTAT DMAPDQETEQ  60
   61 SVSKSIARQA LALLVVYLSL GVLIYWLTLD SDNAYQTHPV AVALYFFVVT FCGFLIVHFV 120
  121 VKIGWLDSFC FSVMMVTTVG FGDRAFNTWL GTFLAAVWLL VSTLAVARAF LFLADARADK 180
  181 RNRERAKKVL GESISISQFF AADIDNDGRL SLAEFAIYKL KQMEKITQED FIQICNQFDK 240
  241 LDRTQSGRIT LVDLTTATSV

Type	Start	End	Confidence
Cytoplasmic	1	69	0.97
Transmembrane Helix	70	89	0.95
Non-Cytoplasmic	90	96	0.89
Transmembrane Helix	97	119	0.87
Cytoplasmic	120	124	0.71
Transmembrane Helix	125	146	0.83
Non-Cytoplasmic	147	151	0.76
Transmembrane Helix	152	172	0.93
Cytoplasmic	173	260	0.97