YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCO2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANDGNGDNN DDPLRQYLMN PRINPPPPSL LTLPENNDVT IPMPITPLEL KNRLIFGSFV  60
   61 RSRKESSLPI DALSQNPSTS SSATTSFSDS TDLLLPLTEP NKPVRKSKPT INFHRSKTAP 120
  121 AMAAINNISH PNDPKTDQQS DSKTIVNQAV ALLVVYLSLG VLIYWLNRDS YNVKQTHPVV 180
  181 DALYFCIVTM CTIGYGDITP DSVVTKLFSI FFVLVGFGFM DILLSGMVTY VLDLQENYML 240
  241 ETARNESLNL NDRDKVRSYI IDVKKGRMRI RLKVGLALGV VVLCLGFGVL IMHFVEKIGW 300
  301 LDSFYFSVMS VTTVGYGDRA FNTLAGRLLA AMWLLVSTLA VARAILFLAE SRVDKRNRER 360
  361 AKKVLGESMS ISQFLDADID CNGCVSKAEF VIYKLKKMDK ITEKDINPIG FQFDKLDRTN 420
  421 SGRITLLDLL ESSTKDLPTA TSI

Type	Start	End	Confidence
Non-Cytoplasmic	1	144	0.85
Transmembrane Helix	145	166	0.89
Cytoplasmic	167	177	0.77
Transmembrane Helix	178	198	0.81
Non-Cytoplasmic	199	206	0.83
Transmembrane Helix	207	231	0.86
Cytoplasmic	232	273	0.95
Transmembrane Helix	274	295	0.95
Non-Cytoplasmic	296	327	0.84
Transmembrane Helix	328	347	0.94
Cytoplasmic	348	443	0.89