YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KAT2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKRKHLNTR PMSISCTRNF FKRFCVEEYN MDTFKHSSFL SADLLPSLGA RINQSTKLRK  60
   61 HIISPFDPRF RGWEMWLVIL VIYSAWICPF EFAFITYKKD ALFIIDNIVN GFFAIDIILT 120
  121 FFVAYLDSHS YLLVDKPKKI AIRYLSTWFA FDVCSTAPFQ SLSLLFKYNG SEIGFRVLSM 180
  181 LRLWRLRRVS SLFARLEKDI RFNYFWTRCT KLISVTLFAV HCAGCFAYLI ADQYHDPTKT 240
  241 WIGAVYPNFK ETSVWSRYVT ALYWSITTLT TTGYGDLHAE NPREMLFFVF FMLFNLGFTS 300
  301 YLIGNMTNLV VHWTSRTRNF RDTVRAASEF ASRNQLPPNI QDQMLSHICL KFKTEGLKQQ 360
  361 EALNGLPKAI RSSIANYLFF PIVQNVYLFH GVSRNFLFQL VSDIDAEYFP PREDVILQNE 420
  421 APTDLYILVS GAVDFTVYVG EEDQVQGKAV VGDAFGEIGV LCYTPQPFTV RTTELSQILR 480
  481 ISKKSLMSAM RAHVEDGRVI MNNLFMKLRG QQSIAIDDPN SEPESLLKEW LVGGSKTGEG 540
  541 NASDQGHGHK YLQLHDSENI DMGSTEWRDS RRSGYGETKR VREHTIEIEE GEKPNKEFDG 600
  601 KGCSDADLTS FEFHSQEAYP YCRSNIQIKQ HEAAKPKDKR VTIHLKSRDK DLSKLIILPA 660
  661 SIEELLRLAG EKFGYSFTKV TNAENAEIDD EDVIRDGDHL YILINENS

Type	Start	End	Confidence
Cytoplasmic	1	74	0.90
Transmembrane Helix	75	95	0.92
Non-Cytoplasmic	96	107	0.70
Transmembrane Helix	108	126	0.88
Cytoplasmic	127	143	0.69
Transmembrane Helix	144	162	0.65
Non-Cytoplasmic	163	167	0.46
Transmembrane Helix	168	186	0.52
Cytoplasmic	187	208	0.80
Transmembrane Helix	209	231	0.86
Non-Cytoplasmic	232	258	0.76
Transmembrane Helix	259	277	0.59
Cytoplasmic	278	285	0.52
Transmembrane Helix	286	311	0.83
Non-Cytoplasmic	312	708	0.83