YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KAT1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSISWTRNFF ERFCVEEYNI DTIKQSSFLS ADLLPSLGAR INQSTKLRKH IISPFNPRYR  60
   61 AWEMWLVLLV IYSAWICPFQ FAFITYKKDA IFIIDNIVNG FFAIDIILTF FVAYLDSHSY 120
  121 LLVDSPKKIA IRYLSTWFAF DVCSTAPFQP LSLLFNYNGS ELGFRILSML RLWRLRRVSS 180
  181 LFARLEKDIR FNYFWIRCTK LISVTLFAIH CAGCFNYLIA DRYPNPRKTW IGAVYPNFKE 240
  241 ASLWNRYVTA LYWSITTLTT TGYGDFHAEN PREMLFDIFF MMFNLGLTAY LIGNMTNLVV 300
  301 HWTSRTRTFR DSVRAASEFA SRNQLPHDIQ DQMLSHICLK FKTEGLKQQE TLNNLPKAIR 360
  361 SSIANYLFFP IVHNIYLFQG VSRNFLFQLV SDIDAEYFPP KEDIILQNEA PTDLYILVSG 420
  421 AVDFTVYVDG HDQFQGKAVI GETFGEVGVL YYRPQPFTVR TTELSQILRI SRTSLMSAMH 480
  481 AHADDGRVIM NNLFMKLRGQ QSIAIDDSNT SGHENRDFKS MGWEEWRDSR KDGYGLDVTN 540
  541 PTSDTALMDA IHKEDTEMVK KILKEQKIER AKVERSSSET AGRSYANDSS KKDPYCSSSN 600
  601 QIIKPCKREE KRVTIHMMSE SKNGKLILLP SSIEELLRLA SEKFGGCNFT KITNADNAEI 660
  661 DDLDVIWDGD HLYFSSN

Type	Start	End	Confidence
Cytoplasmic	1	63	0.89
Transmembrane Helix	64	84	0.93
Non-Cytoplasmic	85	91	0.80
Transmembrane Helix	92	115	0.81
Cytoplasmic	116	132	0.69
Transmembrane Helix	133	151	0.78
Non-Cytoplasmic	152	197	0.51
Transmembrane Helix	198	220	0.82
Cytoplasmic	221	242	0.53
Transmembrane Helix	243	264	0.55
Non-Cytoplasmic	265	277	0.57
Transmembrane Helix	278	300	0.86
Cytoplasmic	301	361	0.63
Transmembrane Helix	362	378	0.49
Non-Cytoplasmic	379	677	0.85