YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	IRT3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATSSNVLC NASESDLCRD DSAAFLLKFV AIASILLAGA AGVTIPLIGR NRRFLQTDGN  60
   61 LFVTAKAFAA GVILATGFVH MLAGGTEALK NPCLPDFPWS KFPFPGFFAM IAALITLFVD 120
  121 FMGTQYYERK QEREASESVE PFGREQSPGI VVPMIGEGTN DGKVFGEEDS GGIHIVGIHA 180
  181 HAAHHRHSHP PGHDSCEGHS KIDIGHAHAH GHGHGHGHGH VHGGLDAVNG ARHIVVSQVL 240
  241 ELGIVSHSII IGLSLGVSQS PCTIRPLIAA LSFHQFFEGF ALGGCISQAQ FRNKSATIMA 300
  301 CFFALTTPIG IGIGTAVASS FNSHSVGALV TEGILDSLSA GILVYMALVD LIAADFLSTK 360
  361 MRCNFRLQIV SYVMLFLGAG LMSSLAIWA

Type	Start	End	Confidence
Non-Cytoplasmic	1	28	0.90
Transmembrane Helix	29	49	0.92
Cytoplasmic	50	61	0.88
Transmembrane Helix	62	83	0.91
Non-Cytoplasmic	84	103	0.89
Transmembrane Helix	104	124	0.92
Cytoplasmic	125	238	0.96
Transmembrane Helix	239	257	0.67
Non-Cytoplasmic	258	266	0.53
Transmembrane Helix	267	286	0.68
Cytoplasmic	287	297	0.78
Transmembrane Helix	298	318	0.94
Non-Cytoplasmic	319	333	0.79
Transmembrane Helix	334	357	0.80
Cytoplasmic	358	367	0.82
Transmembrane Helix	368	388	0.93
Non-Cytoplasmic	389	389	0.99