YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	IRT1_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.95
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	44	0.92
Transmembrane Helix	45	65	0.93
Cytoplasmic	66	77	0.82
Transmembrane Helix	78	98	0.94
Non-Cytoplasmic	99	119	0.92
Transmembrane Helix	120	143	0.84
Cytoplasmic	144	184	0.96
Transmembrane Helix	185	207	0.87
Non-Cytoplasmic	208	215	0.78
Transmembrane Helix	216	237	0.90
Cytoplasmic	238	246	0.86
Transmembrane Helix	247	270	0.91
Non-Cytoplasmic	271	277	0.88
Transmembrane Helix	278	299	0.92
Cytoplasmic	300	318	0.82
Transmembrane Helix	319	336	0.97
Non-Cytoplasmic	337	339	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTIFLVLIF VSFAISPATS TAPEECGSES ANPCVNKAKA LPLKVIAIFV ILIASMIGVG  60
   61 APLFSRNVSF LQPDGNIFTI IKCFASGIIL GTGFMHVLPD SFEMLSSICL EENPWHKFPF 120
  121 SGFLAMLSGL ITLAIDSMAT SLYTSKNAVG IMPHGHGHGH GPANDVTLPI KEDDSSNAQL 180
  181 LRYRVIAMVL ELGIIVHSVV IGLSLGATSD TCTIKGLIAA LCFHQMFEGM GLGGCILQAE 240
  241 YTNMKKFVMA FFFAVTTPFG IALGIALSTV YQDNSPKALI TVGLLNACSA GLLIYMALVD 300
  301 LLAAEFMGPK LQGSIKMQFK CLIAALLGCG GMSIIAKWA