YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TI172_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTPETSREP CPDRILDDIG GAFGMGAVGG SAFHFIKGTY NSPKGSRFVG GTQSVSMNAP  60
   61 RTGGSFAVWG GLFSTFDCTM VYLRQKEDPW NSIIAGAATG GFLSMRQGAG AASRSAIFGG 120
  121 VLLALIEGAG IMLNKVLAQP QNMMMEDPGM QGMPGMQGMQ GMPGMPGMQG MPGMQGMQMG 180
  181 QMQSQAQIRS ESQNQNTASS SSSSSWFGGL FDKKKEEVQP GSESKTEVLE SFDAPPVPSF 240
  241 EFK

Type	Start	End	Confidence
Cytoplasmic	1	18	0.79
Transmembrane Helix	19	36	0.86
Non-Cytoplasmic	37	61	0.75
Transmembrane Helix	62	83	0.77
Cytoplasmic	84	89	0.79
Transmembrane Helix	90	109	0.66
Non-Cytoplasmic	110	115	0.53
Transmembrane Helix	116	137	0.88
Cytoplasmic	138	243	0.69