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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: HIPL1_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.96
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLHQFLVFL FLFLSCFALS SWALPLCSDS RAPSEVNSTL SFCPYKGKTC CNTMKDTSLM  60
   61 KQFQAMNISD KGCASVVKSI LCANCDPFSS DLFRDNSDQQ SVPILCNSTS SANSTENFCS 120
  121 ETWETCQNVS ISGSLFAASL QGRAGAPSNK NASKLADLWQ SKTDFCSAFG GASSNETVCF 180
  181 SGEPVALNDN DTTPDKPPSG ICLEKIGNGS YLNMVPHPDG SNRAFFSTQP GIVFLAGIPD 240
  241 QDSGGVLDVD PSSPFVDMTD EIHFDTEFGM MGMAFHPKFA QNGRFFASFN CDKSKWPGCT 300
  301 GRCSCNSDVN CDPSKLTPDS GSQPCQYQTV IAEYTANSTS SDPSKAKNAK PTEVRRIFTM 360
  361 GLPFTSHHAG QILFGPDGYL YFMMGDGGGG ADPYNFAQNK KSLLGKIMRL DVDNIPSASE 420
  421 ISKMGLWGNY SIPKDNPFRE DKELEPEIWA VGLRNPWRCS FDSSRPSYFM CADVGQDTYE 480
  481 EVDLISKGGN YGWRVYEGPD LFHPESSPGG NTSVKSLNPI FPVMGYNHSE VDSSGKSASI 540
  541 TGGYFYRSET DPCIAGRYVY ADLYGNGVWA GIETPANSGS FVTKRTTFSC ASDSPMKCSD 600
  601 SPGTSGLSLG YVFSFGEDNN KDIYLLTSNG VYRVVRPSRC NLTCSKENST ARRNPGTSSS 660
  661 PSSSSSSCYK HINGFHGSLV VLFVSLSLIL LGLLN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle