YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GONS1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.97
Transmembrane Helix	33	55	0.89
Non-Cytoplasmic	56	65	0.85
Transmembrane Helix	66	87	0.91
Cytoplasmic	88	98	0.77
Transmembrane Helix	99	118	0.92
Non-Cytoplasmic	119	125	0.68
Transmembrane Helix	126	145	0.82
Cytoplasmic	146	152	0.80
Transmembrane Helix	153	172	0.91
Non-Cytoplasmic	173	177	0.66
Transmembrane Helix	178	196	0.62
Cytoplasmic	197	216	0.60
Transmembrane Helix	217	236	0.89
Non-Cytoplasmic	237	252	0.56
Transmembrane Helix	253	275	0.90
Cytoplasmic	276	281	0.52
Transmembrane Helix	282	302	0.59
Non-Cytoplasmic	303	307	0.64
Transmembrane Helix	308	327	0.87
Cytoplasmic	328	333	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLYEHDGVD LEDGKTVKSG GDKPIPRKIH NRALLSGLAY CISSCSMILV NKFVLSSYNF  60
   61 NAGIFLMLYQ NFVSVIIVVG LSLMGLITTE PLTLRLMKVW FPVNVIFVGM LITSMFSLKY 120
  121 INVAMVTVLK NVTNVITAVG EMYLFNKQHD NRVWAALFLM IISAVSGGIT DLSFNAVGYA 180
  181 WQIANCFLTA SYSLTLRKTM DTAKQVTQSG NLNEFSMVLL NNTLSLPLGL LLSYFFNEMD 240
  241 YLYQTPLLRL PSFWMVMTLS GLLGLAISFT SMWFLHQTGA TTYSLVGSLN KIPLSIAGIV 300
  301 LFNVPTSLQN SASILFGLVA GVVFARAKMR EKS