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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: GCP2_ARATH
Protein type: Transmembrane
Type Confidence: 0.91
Topology Confidence: 0.81
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQPLTTRPT VTGISIIPFR QPPPLCSFLF VIVLFVATFY TLHHPDAVTP PLLFSRNAYN  60
   61 ALRLRRLFLS SASNATISSY LRELTRHPHL AGTKPSLDTL HYVFNHFQSL GLETHVAEYE 120
  121 ALLSYPTHIS VTASFSNTTT LEFDLNDVPG DSPVVRPYHA YSPSGSAQGN VVFVNHGEER 180
  181 DYHALESIGV SVKGCVVLAR KGENLGRGAI VKIAEAKGAL GVLIYAENDG GGFGGIERGT 240
  241 VMRGIGDPVS PGWPGVVGGE KLSLDDELVT RRFPKIPSLP LSLRNAEIIL ASLGGARAPL 300
  301 EWRNSGRVGP GQRVGPGRMV INMTFQGEMK MKKINNVVVT IRGSEEADRY VILGNHRDAW 360
  361 TYGAVDPNSG TSALLDISRR FALLLKSGWR PRRTILLCSW DAEEFGMIGS TEWIEENVLN 420
  421 LGASAVAYLN VDCAVQGSGF FAGATPQLDG LLVDVLKLVQ DPDAVGLTVE ETFKSQNNII 480
  481 QRLSRVDSDF SGFLHHAGIP SIDMYYGADY PVYHTAFDSY DWMIHNADPL FHRHVAMAGI 540
  541 WGLLGILLAD EPLIPFDYIS YAEQLQAHRD KLSKLLEGKV SVNPLSMAIQ EFSLVAKEAA 600
  601 DEAKKLKGKS YSKNDVAAAA KRRELNDRLM LVERGFLDAE GIKGKEWFKH LVYGPAAEPE 660
  661 SKLGFFPGIA DAIAMNASEG IIEHEIWRVA RAIQRASKAL KGGFT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle