YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FAD6E_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAGGRMPVP TSSKKSETDT TKRVPCEKPP FSVGDLKKAI PPHCFKRSIP RSFSYLISDI  60
   61 IIASCFYYVA TNYFSLLPQP LSYLAWPLYW ACQGCVLTGI WVIAHECGHH AFSDYQWLDD 120
  121 TVGLIFHSFL LVPYFSWKYS HRRHHSNTGS LERDEVFVPK QKSAIKWYGK YLNNPLGRIM 180
  181 MLTVQFVLGW PLYLAFNVSG RPYDGFACHF FPNAPIYNDR ERLQIYLSDA GILAVCFGLY 240
  241 RYAAAQGMAS MICLYGVPLL IVNAFLVLIT YLQHTHPSLP HYDSSEWDWL RGALATVDRD 300
  301 YGILNKVFHN ITDTHVAHHL FSTMPHYNAM EATKAIKPIL GDYYQFDGTP WYVAMYREAK 360
  361 ECIYVEPDRE GDKKGVYWYN NKL

Type	Start	End	Confidence
Cytoplasmic	1	54	0.84
Transmembrane Helix	55	76	0.79
Non-Cytoplasmic	77	85	0.63
Transmembrane Helix	86	105	0.75
Cytoplasmic	106	175	0.64
Transmembrane Helix	176	196	0.84
Non-Cytoplasmic	197	224	0.73
Transmembrane Helix	225	244	0.84
Cytoplasmic	245	250	0.71
Transmembrane Helix	251	272	0.92
Non-Cytoplasmic	273	383	0.75