YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KASC1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQALQSSSLR ASPPNPLRLP SNRQSHQLIT NARPLRRQQR SFISASASTV SAPKRETDPK  60
   61 KRVVITGMGL VSVFGNDVDA YYEKLLSGES GISLIDRFDA SKFPTRFGGQ IRGFSSEGYI 120
  121 DGKNERRLDD CLKYCIVAGK KALESANLGG DKLNTIDKRK AGVLVGTGMG GLTVFSEGVQ 180
  181 NLIEKGHRRI SPFFIPYAIT NMGSALLAID LGLMGPNYSI STACATSNYC FYAAANHIRR 240
  241 GEADMMIAGG TEAAIIPIGL GGFVACRALS QRNDDPQTAS RPWDKARDGF VMGEGAGVLV 300
  301 MESLEHAMKR GAPIVAEYLG GAVNCDAHHM TDPRADGLGV SSCIERCLED AGVSPEEVNY 360
  361 INAHATSTLA GDLAEINAIK KVFKSTSGIK INATKSMIGH CLGAAGGLEA IATVKAINTG 420
  421 WLHPSINQFN PEQAVDFDTV PNEKKQHEVD VAISNSFGFG GHNSVVAFSA FKP

Type	Start	End	Confidence
Cytoplasmic	1	192	0.77
Transmembrane Helix	193	212	0.75
Non-Cytoplasmic	213	473	0.56