YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	EXPA7_ARATH
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPISSSWSF NKFFSIVFVV FAISGEFVAG YYRPGPWRYA HATFYGDETG GETMGGACGY  60
   61 GNLFNSGYGL STAALSTTLF NDGYGCGQCF QITCSKSPHC YSGKSTVVTA TNLCPPNWYQ 120
  121 DSNAGGWCNP PRTHFDMAKP AFMKLAYWRA GIIPVAYRRV PCQRSGGMRF QFQGNSYWLL 180
  181 IFVMNVGGAG DIKSMAVKGS RTNWISMSHN WGASYQAFSS LYGQSLSFRV TSYTTGETIY 240
  241 AWNVAPANWS GGKTYKSTAN FR

Type	Start	End	Confidence
Cytoplasmic	1	9	0.49
Transmembrane Helix	10	31	0.71
Non-Cytoplasmic	32	176	0.60
Transmembrane Helix	177	197	0.51
Cytoplasmic	198	262	0.52