YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AHL27_ARATH
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGGYEQGGG ASRYFHNLFR PEIHHQQLQP QGGINLIDQH HHQHQQHQQQ QQPSDDSRES  60
   61 DHSNKDHHQQ GRPDSDPNTS SSAPGKRPRG RPPGSKNKAK PPIIVTRDSP NALRSHVLEV 120
  121 SPGADIVESV STYARRRGRG VSVLGGNGTV SNVTLRQPVT PGNGGGVSGG GGVVTLHGRF 180
  181 EILSLTGTVL PPPAPPGAGG LSIFLAGGQG QVVGGSVVAP LIASAPVILM AASFSNAVFE 240
  241 RLPIEEEEEE GGGGGGGGGG GPPQMQQAPS ASPPSGVTGQ GQLGGNVGGY GFSGDPHLLG 300
  301 WGAGTPSRPP F

Type	Start	End	Confidence
Cytoplasmic	1	184	0.63
Transmembrane Helix	185	206	0.46
Non-Cytoplasmic	207	211	0.66
Transmembrane Helix	212	234	0.67
Cytoplasmic	235	311	0.63