YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ERD2A_ARATH
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIFRFAGDM SHLISVLILL LKIYATKSCA GISLKTQELY ALVFLTRYLD LFTDYVSLYN  60
   61 SIMKIVFIAS SLAIVWCMRR HPLVRRSYDK DLDTFRHQYV VLACFVLGLI LNEKFTVQEV 120
  121 FWAFSIYLEA VAILPQLVLL QRSGNVDNLT GQYVVFLGAY RGLYIINWIY RYFTEDHFTR 180
  181 WIACVSGLVQ TALYADFFYY YYISWKTNTK LKLPA

Type	Start	End	Confidence
Cytoplasmic	1	11	0.71
Transmembrane Helix	12	34	0.70
Non-Cytoplasmic	35	57	0.87
Transmembrane Helix	58	78	0.90
Cytoplasmic	79	94	0.92
Transmembrane Helix	95	112	0.81
Non-Cytoplasmic	113	119	0.61
Transmembrane Helix	120	140	0.73
Cytoplasmic	141	148	0.64
Transmembrane Helix	149	170	0.79
Non-Cytoplasmic	171	177	0.59
Transmembrane Helix	178	202	0.80
Cytoplasmic	203	215	0.66