YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ERG24_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.86
Transmembrane Helix	16	36	0.86
Cytoplasmic	37	55	0.84
Transmembrane Helix	56	76	0.94
Non-Cytoplasmic	77	87	0.75
Transmembrane Helix	88	107	0.95
Cytoplasmic	108	145	0.96
Transmembrane Helix	146	165	0.94
Non-Cytoplasmic	166	175	0.70
Transmembrane Helix	176	193	0.93
Cytoplasmic	194	208	0.85
Transmembrane Helix	209	232	0.84
Non-Cytoplasmic	233	238	0.89
Transmembrane Helix	239	258	0.95
Cytoplasmic	259	275	0.90
Transmembrane Helix	276	297	0.86
Non-Cytoplasmic	298	307	0.82
Transmembrane Helix	308	333	0.80
Cytoplasmic	334	369	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLDMDLGVL LPSLQSVYVL VFYFVYLAVA GEILPGKVIR GVLLSDGSQL RYRCNGLLAL  60
   61 ILLVAILGIC AKLGIVSPLV VADRGLELLS ATFIFCVLVT LALYVTGRSS SNKGSSLKPH 120
  121 VSGNLVHDWW FGIQLNPQFM SIDLKFFFVR AGMMGWLLIN LSILAKSVQD GSLSQSMILY 180
  181 QIFCALYILD YFVHEEYMTS TWDIIAERLG FMLVFGDLLW IPFTFSIQGW WLLHNKVELT 240
  241 VPAIVVNCLV FLIGYMVFRG ANKQKHIFKK NPKTPIWGKP PVVVGGKLLV SGYWGIARHC 300
  301 NYLGDLMLAL SFSLPCGISS PVPYFYPIYL LILLIWRERR DEVRCAEKYK EIWAEYLRLV 360
  361 PWRILPYVY