YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ERG13_ARATH
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYAWLWTLL AFVLTWMVFH LIKMKKAATG DLEAEAEARR DGATDVIIVG AGVAGASLAY  60
   61 ALAKDGRRVH VIERDLKEPQ RFMGELMQAG GRFMLAQLGL EDCLEDIDAQ EAKSLAIYKD 120
  121 GKHATLPFPD DKSFPHEPVG RLLRNGRLVQ RLRQKAASLS NVQLEEGTVK SLIEEEGVVK 180
  181 GVTYKNSAGE EITAFAPLTV VCDGCYSNLR RSLVDNTEEV LSYMVGYVTK NSRLEDPHSL 240
  241 HLIFSKPLVC VIYQITSDEV RCVAEVPADS IPSISNGEMS TFLKKSMAPQ IPETGNLREI 300
  301 FLKGIEEGLP EIKSTATKSM SSRLCDKRGV IVLGDAFNMR HPIIASGMMV ALSDICILRN 360
  361 LLKPLPNLSN TKKVSDLVKS FYIIRKPMSA TVNTLASIFS QVLVATTDEA REGMRQGCFN 420
  421 YLARGDFKTR GLMTILGGMN PHPLTLVLHL VAITLTSMGH LLSPFPSPRR FWHSLRILAW 480
  481 ALQMLGAHLV DEGFKEMLIP TNAAAYRRNY IATTTV

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.69
Transmembrane Helix	5	22	0.83
Cytoplasmic	23	42	0.70
Transmembrane Helix	43	63	0.69
Non-Cytoplasmic	64	444	0.71
Transmembrane Helix	445	463	0.81
Cytoplasmic	464	471	0.57
Transmembrane Helix	472	490	0.43
Non-Cytoplasmic	491	516	0.52