YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DTX47_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	104	0.98
Transmembrane Helix	105	127	0.83
Non-Cytoplasmic	128	146	0.78
Transmembrane Helix	147	168	0.85
Cytoplasmic	169	178	0.91
Transmembrane Helix	179	200	0.92
Non-Cytoplasmic	201	227	0.92
Transmembrane Helix	228	247	0.91
Cytoplasmic	248	264	0.73
Transmembrane Helix	265	288	0.83
Non-Cytoplasmic	289	323	0.92
Transmembrane Helix	324	357	0.62
Cytoplasmic	358	403	0.94
Transmembrane Helix	404	425	0.91
Non-Cytoplasmic	426	442	0.87
Transmembrane Helix	443	464	0.89
Cytoplasmic	465	471	0.79
Transmembrane Helix	472	491	0.91
Non-Cytoplasmic	492	495	0.74
Transmembrane Helix	496	516	0.85
Cytoplasmic	517	543	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIKSQRLTL FSPLLSKTRR IPVNSHQTLV AESVITRRTL GAITATPSFH KNPVVIRRRI  60
   61 KLERVTRNCV RIDREIDEEE EEEEKERGDL VKQSIWEQMK EIVKFTGPAM GMWICGPLMS 120
  121 LIDTVVIGQG SSIELAALGP GTVLCDHMSY VFMFLSVATS NMVATSLAKQ DKKEAQHQIS 180
  181 VLLFIGLVCG LMMLLLTRLF GPWAVTAFTR GKNIEIVPAA NKYIQIRGLA WPFILVGLVA 240
  241 QSASLGMKNS WGPLKALAAA TIINGLGDTI LCLFLGQGIA GAAWATTASQ IVSAYMMMDS 300
  301 LNKEGYNAYS FAIPSPQELW KISALAAPVF ISIFSKIAFY SFIIYCATSM GTHVLAAHQV 360
  361 MAQTYRMCNV WGEPLSQTAQ SFMPEMLYGA NRNLPKARTL LKSLMIIGAT LGLVLGVIGT 420
  421 AVPGLFPGVY THDKVIISEM HRLLIPFFMA LSALPMTVSL EGTLLAGRDL KFVSSVMSSS 480
  481 FIIGCLTLMF VTRSGYGLLG CWFVLVGFQW GRFGLYLRRL LSPGGILNSD GPSPYTVEKI 540
  541 KSI