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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ECA2_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.76
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEEKSFSAW SWSVEQCLKE YKTRLDKGLT SEDVQIRRQK YGFNELAKEK GKPLWHLVLE  60
   61 QFDDTLVKIL LGAAFISFVL AFLGEEHGSG SGFEAFVEPF VIVLILILNA VVGVWQESNA 120
  121 EKALEALKEM QCESAKVLRD GNVLPNLPAR ELVPGDIVEL NVGDKVPADM RVSGLKTSTL 180
  181 RVEQSSLTGE AMPVLKGANL VVMDDCELQG KENMVFAGTT VVNGSCVCIV TSIGMDTEIG 240
  241 KIQRQIHEAS LEESETPLKK KLDEFGSRLT TAICIVCVLV WMINYKNFVS WDVVDGYKPV 300
  301 NIKFSFEKCT YYFKIAVALA VAAIPEGLPA VITTCLALGT RKMAQKNAIV RKLPSVETLG 360
  361 CTTVICSDKT GTLTTNQMSA TEFFTLGGKT TTTRVFSVSG TTYDPKDGGI VDWGCNNMDA 420
  421 NLQAVAEICS ICNDAGVFYE GKLFRATGLP TEAALKVLVE KMGIPEKKNS ENIEEVTNFS 480
  481 DNGSSVKLAC CDWWNKRSKK VATLEFDRVR KSMSVIVSEP NGQNRLLVKG AAESILERSS 540
  541 FAQLADGSLV ALDESSREVI LKKHSEMTSK GLRCLGLAYK DELGEFSDYS SEEHPSHKKL 600
  601 LDPSSYSNIE TNLIFVGVVG LRDPPREEVG RAIEDCRDAG IRVMVITGDN KSTAEAICCE 660
  661 IRLFSENEDL SQSSFTGKEF MSLPASRRSE ILSKSGGKVF SRAEPRHKQE IVRMLKEMGE 720
  721 IVAMTGDGVN DAPALKLADI GIAMGITGTE VAKEASDMVL ADDNFSTIVS AVAEGRSIYN 780
  781 NMKAFIRYMI SSNVGEVISI FLTAALGIPE CMIPVQLLWV NLVTDGPPAT ALGFNPADID 840
  841 IMKKPPRKSD DCLIDSWVLI RYLVIGSYVG VATVGIFVLW YTQASFLGIS LISDGHTLVS 900
  901 FTQLQNWSEC SSWGTNFTAT PYTVAGGLRT IAFENNPCDY FTLGKVKPMT LSLTVLVAIE 960
  961 MFNSLNALSE DNSLLTMPPW RNPWLLVAMT VSFALHCVIL YVPFLANVFG IVPLSFREWF1020
 1021 VVILVSFPVI LIDEALKFIG RCRRTRIKKK IKTM

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle