YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DET2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEIADKTFF RYCLLTLIFA GPPTAVLLKF LQAPYGKHNR TGWGPTVSPP IAWFVMESPT  60
   61 LWLTLLLFPF GRHALNPKSL LLFSPYLIHY FHRTIIYPLR LFRSSFPAGK NGFPITIAAL 120
  121 AFTFNLLNGY IQARWVSHYK DDYEDGNWFW WRFVIGMVVF ITGMYINITS DRTLVRLKKE 180
  181 NRGGYVIPRG GWFELVSCPN YFGEAIEWLG WAVMTWSWAG IGFFLYTCSN LFPRARASHK 240
  241 WYIAKFKEEY PKTRKAVIPF VY

Type	Start	End	Confidence
Cytoplasmic	1	8	0.92
Transmembrane Helix	9	31	0.88
Non-Cytoplasmic	32	50	0.86
Transmembrane Helix	51	71	0.88
Cytoplasmic	72	110	0.65
Transmembrane Helix	111	131	0.88
Non-Cytoplasmic	132	147	0.64
Transmembrane Helix	148	169	0.92
Cytoplasmic	170	184	0.63
Transmembrane Helix	185	203	0.57
Non-Cytoplasmic	204	211	0.64
Transmembrane Helix	212	232	0.87
Cytoplasmic	233	262	0.91