YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CYB_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	35	0.83
Transmembrane Helix	36	59	0.88
Non-Cytoplasmic	60	85	0.80
Transmembrane Helix	86	109	0.82
Cytoplasmic	110	117	0.81
Transmembrane Helix	118	140	0.94
Non-Cytoplasmic	141	149	0.68
Transmembrane Helix	150	173	0.86
Cytoplasmic	174	185	0.74
Transmembrane Helix	186	207	0.92
Non-Cytoplasmic	208	235	0.77
Transmembrane Helix	236	256	0.88
Cytoplasmic	257	269	0.66
Transmembrane Helix	270	288	0.58
Non-Cytoplasmic	289	294	0.67
Transmembrane Helix	295	318	0.85
Cytoplasmic	319	326	0.75
Transmembrane Helix	327	347	0.91
Non-Cytoplasmic	348	354	0.67
Transmembrane Helix	355	376	0.91
Cytoplasmic	377	393	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIRNQRFSL LKQPISSTLN QHLVDYPTPS NLSYWWGFGP LAGICLVIQI VTGVFLAMHY  60
   61 TPHVDLAFNS VEHIMRDVEG GWLLRYMHAN GASMFFIVVY LHIFRGLYYA SYSSPREFVW 120
  121 CLGVVIFLLM IVTAFIGYVL PWGQMSFWGA TVITSLASAI PVVGDTIVTW LWGGFSVDNA 180
  181 TLNRFFSLHY LLPFILVGAS LLHLAALHQY GSNNPLGVHS EMDKIAFYPY FYVKDLVGWV 240
  241 AFAIFFSIWI FYAPNVLGHP DNYIPANPMS TPPHIVPEWY FLPIYAILRS IPDKAGGVAA 300
  301 IALVFICLLA LPFFKSMYVR SSSFRPIYQG MFWLLLADCL LLGWIGCQPV EAPFVTIGQI 360
  361 SSLVFFLFFA ITPILGRVGR GIPNSYTDET DHT