YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COX3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIESQRHSYH LVDPSPWPIS GSLGALATTV GGVMYMHSFQ GGARLLSLGL IFILYTMFVW  60
   61 WRDVLRESTL EGHHTKVVQL GLRYGFILFI VSEVMFFFAF FWAFFHSSLA PAVEIGGIWP 120
  121 PKGIEVLDPW EIPFLNTLIL LSSGAAVTWA HHAILAGKEK RAVYALVATV LLALVFTGFQ 180
  181 GMEYYQAPFT ISDSIYGSTF FLATGFHGFH VIIGTLFLII CGIRQYLGHL TKEHHVGFEA 240
  241 AAWYWHFVDV VWLFLFVSIY WWGGI

Type	Start	End	Confidence
Cytoplasmic	1	15	0.91
Transmembrane Helix	16	36	0.89
Non-Cytoplasmic	37	42	0.74
Transmembrane Helix	43	61	0.94
Cytoplasmic	62	81	0.88
Transmembrane Helix	82	105	0.90
Non-Cytoplasmic	106	131	0.94
Transmembrane Helix	132	153	0.90
Cytoplasmic	154	161	0.86
Transmembrane Helix	162	182	0.93
Non-Cytoplasmic	183	202	0.88
Transmembrane Helix	203	223	0.90
Cytoplasmic	224	241	0.86
Transmembrane Helix	242	263	0.93
Non-Cytoplasmic	264	265	0.86