YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COPT1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHDHMHGMP RPSSSSSSSP SSMMNNGSMN EGGGHHHMKM MMHMTFFWGK NTEVLFSGWP  60
   61 GTSSGMYALC LIFVFFLAVL TEWLAHSSLL RGSTGDSANR AAGLIQTAVY TLRIGLAYLV 120
  121 MLAVMSFNAG VFLVALAGHA VGFMLFGSQT FRNTSDDRKT NYVPPSGCAC

Type	Start	End	Confidence
Non-Cytoplasmic	1	63	0.42
Transmembrane Helix	64	85	0.88
Cytoplasmic	86	101	0.61
Transmembrane Helix	102	122	0.54
Non-Cytoplasmic	123	123	0.25
Transmembrane Helix	124	148	0.75
Cytoplasmic	149	170	0.59