YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|160333148, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFRNLAIKI LFLSQITSGI LGNFSLLIYY LVYYIQHALK PTDLILMHLM ASNALIVLFT  60
   61 GMPHTLAAFE IKQFLNDLGC RLILYIQSVG RSVSVSTTCL LSVFQAITIS HRKSCFKDQK 120
  121 VNAAKYIGCC IFSLWVLFVI IHFIFFAYIL VKRNSKNMTR NRNFEYCSIR GGDDINASLY 180
  181 TALVVCPEIF FSVLIAWSSV SMIVILYRHK QTFQHIHSNT IYSRISPESR ATQKILVLVC 240
  241 TFLAFYTISS VLQGCIALLH NHNWWLVNIT RLTSLCFPSF GPFVLMNHCT FVPRLSLIWM 300
  301 WNKIT

Type	Start	End	Confidence
Cytoplasmic	1	9	0.49
Transmembrane Helix	10	33	0.88
Non-Cytoplasmic	34	43	0.46
Transmembrane Helix	44	67	0.86
Cytoplasmic	68	125	0.58
Transmembrane Helix	126	149	0.88
Non-Cytoplasmic	150	183	0.88
Transmembrane Helix	184	207	0.81
Cytoplasmic	208	234	0.94
Transmembrane Helix	235	257	0.91
Non-Cytoplasmic	258	268	0.80
Transmembrane Helix	269	292	0.78
Cytoplasmic	293	305	0.78